PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G136200.1
Common NameB456_003G136200, LOC105788879
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 158aa    MW: 17074.7 Da    PI: 8.3962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G136200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000663355123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k Fs+   L  H  +H
  Gorai.003G136200.1 33 FACKTCNKKFSSFQALGGHRASH 55
                        78**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF033671.2E-41696IPR004457Zinc finger, ZPR1-type
SuperFamilySSF576673.27E-1031100No hitNo description
PfamPF139122.5E-113257IPR007087Zinc finger, C2H2
SMARTSM003550.213355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3053360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
PfamPF139125.2E-1077102IPR007087Zinc finger, C2H2
SMARTSM003550.578100IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.91278100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MKRGRDIDAM DMADCLMLLS RVGETDQVAG RVFACKTCNK KFSSFQALGG HRASHKKPKL  60
TVGDNEELAV SPTKPKTHEC SICGLEFAIG QALGGHMRRH RAALNDGLVT RDLLPEMNKS  120
TGDGRDPSLD LSLTSWGVDL ELKLGKVTPT PVVHCFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471399.11e-113PREDICTED: zinc finger protein ZAT12
SwissprotQ424102e-38ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A0D2RM651e-113A0A0D2RM65_G
STRINGVIT_06s0004g04180.t014e-53(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-39C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]